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6E6F

KRAS G13D bound to GppNHp (K13GNP)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU MICROMAX-007 HF
Temperature [K]173.15
Detector technologyIMAGE PLATE
Collection date2015-02-03
DetectorRIGAKU RAXIS IV++
Wavelength(s)1.54178
Spacegroup nameC 1 2 1
Unit cell lengths114.486, 39.096, 89.319
Unit cell angles90.00, 124.37, 90.00
Refinement procedure
Resolution36.100 - 3.401
R-factor0.187
Rwork0.182
R-free0.25800
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.011
RMSD bond angle1.375
Data reduction softwareHKL-3000
Data scaling softwareHKL-2000
Phasing softwarePHENIX
Refinement softwarePHENIX (1.10.1_2155)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0003.050
High resolution limit [Å]3.0008.1303.000
Rmerge0.1400.0670.412
Rmeas0.1600.0750.542
Rpim0.0740.0330.348
Total number of observations22660
Number of reflections4526362163
<I/σ(I)>6.6
Completeness [%]97.095.546
Redundancy3.74.31.6
CC(1/2)0.9860.732
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP5.6291.155 mM Sodium acetate, 91 mM sodium citrate tribasic, 183 mM Ammonium acetate, 27.2% PEG 4000, 4.3% stabilization buffer (20 mM HEPES, 50 mM NaCl, 20 mM MgCl2, at pH 7.5), crystals grown 1uL by 1uL mother liquor to protein (22mg/mL), No cryoprotectant was used for diffraction

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PDB entries from 2024-05-15

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