Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6DY6

Mn(II)-bound structure of the engineered cyt cb562 variant, CH2E

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRL BEAMLINE BL12-2
Synchrotron siteSSRL
BeamlineBL12-2
Temperature [K]100
Detector technologyPIXEL
Collection date2017-07-22
DetectorDECTRIS PILATUS 6M
Wavelength(s)1.0
Spacegroup nameP 21 21 21
Unit cell lengths35.720, 49.000, 117.530
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution37.634 - 1.800
R-factor0.2151
Rwork0.210
R-free0.26040
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2bc5
RMSD bond length0.010
RMSD bond angle1.029
Data reduction softwareMOSFLM
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwarePHENIX ((1.11.1_2575: ???))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]48.7301.849
High resolution limit [Å]1.8001.800
Rmerge0.0930.374
Number of reflections197421931
<I/σ(I)>122.5
Completeness [%]99.399.6
Redundancy11.19.7
CC(1/2)0.9970.865
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP8.5293Drop consists of 1 uL of 30% PEG 400, 200 mM Ammonium Acetate and 0.1 M Tris (pH 8.5) mixed with 1 uL of 2.5 mM protein and 2 mM Manganese(II) Chloride

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon