6DXG
amidobenzimidazole (ABZI) STING agonists
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-03-16 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 0.97872 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 81.607, 92.221, 72.735 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 28.767 - 1.905 |
R-factor | 0.1946 |
Rwork | 0.193 |
R-free | 0.23470 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4emu |
RMSD bond length | 0.008 |
RMSD bond angle | 0.909 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | MOLREP |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.930 |
High resolution limit [Å] | 1.900 | 5.160 | 1.900 |
Rmerge | 0.059 | 0.024 | 0.767 |
Rmeas | 0.063 | 0.026 | 0.832 |
Rpim | 0.022 | 0.010 | 0.315 |
Total number of observations | 166478 | ||
Number of reflections | 21273 | 1157 | 864 |
<I/σ(I)> | 14.4 | ||
Completeness [%] | 97.6 | 97.4 | 80.7 |
Redundancy | 7.8 | 7.3 | 6 |
CC(1/2) | 0.999 | 0.848 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 298 | 13-15% PEG8000, 0.07M cacodylate, pH 6.8, 0.8M calcium acetate, and 20% glycerol |