6DOT
Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 5 mM Mg2+ and 200 mM Rb+ for 40 s at 21 C
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-BM |
Synchrotron site | APS |
Beamline | 22-BM |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-04-24 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 0.8 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 81.557, 37.229, 62.052 |
Unit cell angles | 90.00, 96.61, 90.00 |
Refinement procedure
Resolution | 23.348 - 1.423 |
R-factor | 0.1437 |
Rwork | 0.142 |
R-free | 0.16840 |
Starting model (for MR) | 1zbl |
RMSD bond length | 0.007 |
RMSD bond angle | 1.011 |
Data reduction software | HKL-2000 |
Data scaling software | Aimless (0.5.31) |
Phasing software | PHENIX |
Refinement software | PHENIX (1.10_2155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 23.350 | 23.350 | 1.450 |
High resolution limit [Å] | 1.420 | 7.790 | 1.420 |
Rmerge | 0.033 | 0.028 | 0.422 |
Rmeas | 0.046 | 0.040 | 0.597 |
Rpim | 0.033 | 0.028 | 0.422 |
Total number of observations | 67551 | ||
Number of reflections | 34770 | 231 | 1527 |
<I/σ(I)> | 11.8 | ||
Completeness [%] | 99.3 | 96.4 | 87.3 |
Redundancy | 1.9 | 1.7 | 1.9 |
CC(1/2) | 0.998 | 0.995 | 0.593 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 294 | 14% PEG3350, 20% glycerol, 200 mM KI, and 25 mM CaCl2 |