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6DE6

2.1 A resolution structure of histamine dehydrogenase from Rhizobium sp. 4-9

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 17-ID
Synchrotron siteAPS
Beamline17-ID
Temperature [K]100
Detector technologyPIXEL
Collection date2018-03-04
DetectorDECTRIS PILATUS 6M
Wavelength(s)1.0000
Spacegroup nameP 21 21 21
Unit cell lengths103.223, 105.314, 140.038
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution48.427 - 2.100
R-factor0.166
Rwork0.164
R-free0.20220
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3k30
Data reduction softwareXDS
Data scaling softwareAimless (0.6.2)
Phasing softwarePHASER (2.8.2)
Refinement softwarePHENIX
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]48.4302.140
High resolution limit [Å]2.1002.100
Rmerge0.1061.222
Rmeas0.1151.329
Rpim0.0450.519
Total number of observations586744
Number of reflections896134554
<I/σ(I)>12.7
Completeness [%]100.099.9
Redundancy6.56.5
CC(1/2)0.9980.640
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP72980.1M Na HEPES, 18% w/v PEG 12000

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