6DDJ
Crystal Structure of the human BRD2 BD2 bromodimain in complex with a Tetrahydroquinoline analogue
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-12-12 |
Detector | RAYONIX MX300-HS |
Wavelength(s) | 1.0 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 52.357, 72.328, 32.004 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 32.004 - 1.050 |
R-factor | 0.116 |
Rwork | 0.116 |
R-free | 0.12920 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5ig6 |
RMSD bond length | 0.009 |
RMSD bond angle | 1.047 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.070 |
High resolution limit [Å] | 1.049 | 2.650 | 1.050 |
Rmerge | 0.077 | 0.050 | 0.573 |
Rmeas | 0.080 | 0.052 | 0.612 |
Rpim | 0.022 | 0.015 | 0.210 |
Number of reflections | 56564 | 3818 | 3341 |
<I/σ(I)> | 38.7 | ||
Completeness [%] | 98.2 | 98.5 | 93.7 |
Redundancy | 13 | 12.8 | 7.5 |
CC(1/2) | 0.998 | 0.836 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 291.15 | HEHPES, PEG3000 |