6DD0
Crystal structure of VIM-2 complexed with compound 8
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-BM |
Synchrotron site | APS |
Beamline | 22-BM |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-12-06 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 1.00 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 102.630, 79.130, 67.790 |
Unit cell angles | 90.00, 130.50, 90.00 |
Refinement procedure
Resolution | 31.386 - 1.500 |
R-factor | 0.1852 |
Rwork | 0.183 |
R-free | 0.22530 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1ko3 |
Data reduction software | iMOSFLM (7.2.1) |
Data scaling software | SCALA (3.3.22) |
Phasing software | PHASER (2.8.1) |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 33.890 | 33.890 | 1.580 |
High resolution limit [Å] | 1.500 | 4.740 | 1.500 |
Rmerge | 0.281 | 0.116 | 1.320 |
Rmeas | 0.332 | 0.134 | 0.137 |
Rpim | 0.174 | 0.069 | 0.071 |
Total number of observations | 241046 | ||
Number of reflections | 65885 | 2142 | 9613 |
<I/σ(I)> | 5.9 | ||
Completeness [%] | 100.0 | 99.8 | 100 |
Redundancy | 3.7 | 3.6 | 3.6 |
CC(1/2) | 0.948 | 0.961 | 0.155 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293.15 | 0.2 M Calcium acetate, 20% (w/v) PEG 3350, 1 mM TCEP |