6D54
Low Temperature joint X-ray/neutron structure of DNA oligonucleotide d(GTGGCCAC)2 with 2'-SeCH3 modification on Cyt5
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2017-12-12 |
Detector | RIGAKU RAXIS IV++ |
Wavelength(s) | 1.54 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 41.884, 41.884, 24.307 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 21.300 - 1.900 |
Rwork | 0.234 |
R-free | 0.26000 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.006 |
RMSD bond angle | 0.900 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHASER |
Refinement software | nCNS (1.0.0) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 40.000 | 2.000 | 1.710 |
High resolution limit [Å] | 1.650 | 1.900 | 1.650 |
Rmerge | 0.056 | 0.226 | 0.149 |
Number of reflections | 2866 | ||
<I/σ(I)> | 16.6 | 5.3 | 16.6 |
Completeness [%] | 100.0 | 66 | 100 |
Redundancy | 10.4 | 3.4 | 10.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.6 | 303 | 0.1 M magnesium acetate, 30% MPD, 0.1 M MES |
1 | VAPOR DIFFUSION, SITTING DROP | 5.6 | 303 | 0.1 M magnesium acetate, 30% MPD, 0.1 M MES |