6D2R
HLA-B*57:01 presenting GSFDYSGVHLW
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX2 |
Synchrotron site | Australian Synchrotron |
Beamline | MX2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-02-04 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9537 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 50.548, 81.441, 109.394 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 40.721 - 1.830 |
R-factor | 0.1721 |
Rwork | 0.170 |
R-free | 0.20700 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5t6y |
RMSD bond length | 0.004 |
RMSD bond angle | 0.863 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX (1.9_1690) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 1.930 |
High resolution limit [Å] | 1.830 | 1.830 |
Rmerge | 0.043 | 0.270 |
Number of reflections | 40072 | 5653 |
<I/σ(I)> | 24.6 | 6.4 |
Completeness [%] | 98.7 | 96.6 |
Redundancy | 5.7 | 5.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.4 | 294 | 18 % PEG 4000, 0.2 M ammonium acetate and 0.1 M tri-sodium citrate pH 5.4. |