6D1G
Crystal structure of NDM-1 complexed with compound 9
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | APS BEAMLINE 22-BM |
| Synchrotron site | APS |
| Beamline | 22-BM |
| Temperature [K] | 100 |
| Detector technology | CCD |
| Collection date | 2016-11-25 |
| Detector | MARMOSAIC 300 mm CCD |
| Wavelength(s) | 1.00 |
| Spacegroup name | P 1 21 1 |
| Unit cell lengths | 41.500, 60.150, 41.850 |
| Unit cell angles | 90.00, 98.10, 90.00 |
Refinement procedure
| Resolution | 27.310 - 1.150 |
| R-factor | 0.1351 |
| Rwork | 0.134 |
| R-free | 0.16420 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 4tzf |
| Data reduction software | iMOSFLM (7.2.1) |
| Data scaling software | SCALA (3.3.22) |
| Phasing software | PHASER (2.7.16) |
| Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 27.310 | 27.310 | 1.210 |
| High resolution limit [Å] | 1.150 | 3.640 | 1.150 |
| Rmerge | 0.054 | 0.039 | 0.219 |
| Rmeas | 0.063 | 0.046 | 0.046 |
| Rpim | 0.032 | 0.023 | 0.023 |
| Number of reflections | 67772 | 2323 | 9501 |
| <I/σ(I)> | 13.6 | ||
| Completeness [%] | 94.0 | 98.9 | 90.3 |
| Redundancy | 3.9 | 3.8 | 3.7 |
| CC(1/2) | 0.998 | 0.997 | 0.942 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 293.15 | 50 mM Potassium phosphate monobasic, 10 mM Calcium chloride, 25% (w/v) PEG8000 |






