6D1B
Crystal structure of NDM-1 complexed with compound 2
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-BM |
Synchrotron site | APS |
Beamline | 22-BM |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-12-06 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 1.00 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 41.760, 59.800, 42.030 |
Unit cell angles | 90.00, 97.98, 90.00 |
Refinement procedure
Resolution | 29.900 - 1.250 |
R-factor | 0.1507 |
Rwork | 0.149 |
R-free | 0.18370 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4tzf |
Data reduction software | iMOSFLM (7.2.1) |
Data scaling software | SCALA (3.3.22) |
Phasing software | PHASER (2.8.0) |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 29.900 | 29.900 | 1.320 |
High resolution limit [Å] | 1.250 | 3.950 | 1.250 |
Rmerge | 0.068 | 0.045 | 0.671 |
Rmeas | 0.080 | 0.040 | 0.053 |
Rpim | 0.041 | 0.021 | 0.028 |
Number of reflections | 56620 | 1849 | 8239 |
<I/σ(I)> | 9.1 | ||
Completeness [%] | 100.0 | 99.8 | 99.9 |
Redundancy | 3.7 | 3.7 | 3.6 |
CC(1/2) | 0.996 | 0.989 | 0.604 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293.15 | 50 mM Potassium phosphate monobasic, 10 mM Calcium chloride, 25% (w/v) PEG8000 |