6CH8
Crystal structure of a natively-glycosylated BG505 SOSIP.664 HIV-1 Envelope Trimer in complex with the broadly-neutralizing antibodies BG18 and 35O22
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-2 |
Synchrotron site | SSRL |
Beamline | BL12-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-04-26 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.0 |
Spacegroup name | H 3 2 |
Unit cell lengths | 239.223, 239.223, 355.266 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 39.510 - 4.100 |
R-factor | 0.231 |
Rwork | 0.229 |
R-free | 0.27400 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5t3z 5ud9 4toy |
RMSD bond length | 0.008 |
RMSD bond angle | 1.160 |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.31) |
Phasing software | PHASER |
Refinement software | BUSTER (2.10.2) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 39.550 | 39.500 | 4.320 |
High resolution limit [Å] | 4.100 | 12.970 | 4.100 |
Rmerge | 0.295 | 0.061 | 4.346 |
Rmeas | 0.306 | 0.063 | 4.497 |
Rpim | 0.079 | 0.017 | 1.148 |
Number of reflections | 30846 | 1008 | 4480 |
<I/σ(I)> | 8.7 | ||
Completeness [%] | 99.9 | 96.5 | 100 |
Redundancy | 14.9 | 13.1 | 15.3 |
CC(1/2) | 0.998 | 0.998 | 0.640 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8 | 298 | 5% Tacismate pH 8.0, 15% PEG 3350 |