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6CD7

Crystal structure of APH(2")-IVa in complex with plazomicin

Replaces:  6C0C
Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU FR-E SUPERBRIGHT
Temperature [K]100
Detector technologyCCD
Collection date2016-08-10
DetectorRIGAKU SATURN A200
Wavelength(s)1.5418
Spacegroup nameP 1 21 1
Unit cell lengths43.455, 101.813, 72.921
Unit cell angles90.00, 98.47, 90.00
Refinement procedure
Resolution19.597 - 1.530
R-factor0.1728
Rwork0.171
R-free0.20840
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4dfb
RMSD bond length0.010
RMSD bond angle1.090
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwarePHENIX
Refinement softwarePHENIX (dev_2733)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]19.6001.560
High resolution limit [Å]1.5301.530
Rmerge0.0320.708
Number of reflections93863
<I/σ(I)>15.41.3
Completeness [%]99.493.5
Redundancy3.93
CC(1/2)1.0000.571
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7.52980.2 M NACL, 10 MM HEPES (PH 7.5), 25% (W/V) PEG3350 AND 10 MM PLAZOMICIN

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