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6C8Z

Last common ancestor of ADP-dependent phosphofructokinases from Methanosarcinales

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsLNLS BEAMLINE W01B-MX2
Synchrotron siteLNLS
BeamlineW01B-MX2
Temperature [K]100
Detector technologyPIXEL
Collection date2017-12-06
DetectorDECTRIS PILATUS 2M
Wavelength(s)1.458690
Spacegroup nameC 1 2 1
Unit cell lengths81.081, 75.986, 82.442
Unit cell angles90.00, 94.92, 90.00
Refinement procedure
Resolution37.990 - 2.860
R-factor0.200253674607
Rwork0.198
R-free0.23865
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5k27
RMSD bond length0.010
RMSD bond angle1.240
Data reduction softwareXDS (Nov 11, 2017)
Data scaling softwareAimless
Phasing softwareMOLREP
Refinement softwarePHENIX (1.12_2829)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]37.9902.960
High resolution limit [Å]2.8602.860
Rmerge0.1311.094
Rpim0.0550.463
Number of reflections116621156
<I/σ(I)>10.061.78
Completeness [%]99.799.74
Redundancy6.66.5
CC(1/2)0.9960.656
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP4.5292CdCl2 0.02M, MgCl2 0.02M, NiCl2 (II) 0.02M, PEG MME 2000 24% P/V, Sodium Acetate 0.1M pH 4,5

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PDB entries from 2024-05-15

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