6C8Z
Last common ancestor of ADP-dependent phosphofructokinases from Methanosarcinales
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | LNLS BEAMLINE W01B-MX2 |
Synchrotron site | LNLS |
Beamline | W01B-MX2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-12-06 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 1.458690 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 81.081, 75.986, 82.442 |
Unit cell angles | 90.00, 94.92, 90.00 |
Refinement procedure
Resolution | 37.990 - 2.860 |
R-factor | 0.200253674607 |
Rwork | 0.198 |
R-free | 0.23865 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5k27 |
RMSD bond length | 0.010 |
RMSD bond angle | 1.240 |
Data reduction software | XDS (Nov 11, 2017) |
Data scaling software | Aimless |
Phasing software | MOLREP |
Refinement software | PHENIX (1.12_2829) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 37.990 | 2.960 |
High resolution limit [Å] | 2.860 | 2.860 |
Rmerge | 0.131 | 1.094 |
Rpim | 0.055 | 0.463 |
Number of reflections | 11662 | 1156 |
<I/σ(I)> | 10.06 | 1.78 |
Completeness [%] | 99.7 | 99.74 |
Redundancy | 6.6 | 6.5 |
CC(1/2) | 0.996 | 0.656 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.5 | 292 | CdCl2 0.02M, MgCl2 0.02M, NiCl2 (II) 0.02M, PEG MME 2000 24% P/V, Sodium Acetate 0.1M pH 4,5 |