Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6C5F

Human D-Dopachrome tautomerase (D-DT)/ macrophage migration inhibitory factor 2 (MIF2) complexed with the selective inhibitor 4-CPPC

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU
Temperature [K]100
Detector technologyPIXEL
Collection date2018-01-10
DetectorDECTRIS PILATUS 200K
Wavelength(s)1.5418
Spacegroup nameP 3
Unit cell lengths83.936, 83.936, 40.479
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution41.970 - 1.400
R-factor0.1195
Rwork0.118
R-free0.15670
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1dpt
RMSD bond length0.025
RMSD bond angle2.010
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwareMOLREP
Refinement softwareREFMAC (5.8.0158)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0001.420
High resolution limit [Å]1.4003.8001.400
Rmerge0.0400.0380.147
Rmeas0.0420.0390.164
Rpim0.0130.0100.071
Number of reflections6305631643168
<I/σ(I)>33.8
Completeness [%]100.0100100
Redundancy7.914.65.2
CC(1/2)0.9990.983
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP5.829328% - 34% PEG 4000, 0.1 M sodium citrate tribasic dihydrate, pH 5.8, 0.2 M Ammonium acetate

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon