6C4W
Structure of the yeast Pichia membranifaciens cytochrome c
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU RU200 |
Temperature [K] | 173 |
Detector technology | AREA DETECTOR |
Collection date | 1990-12-25 |
Detector | SDMS |
Wavelength(s) | 1.54 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 27.968, 63.715, 64.322 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 15.000 - 2.400 |
R-factor | 0.22197 |
Rwork | 0.216 |
R-free | 0.33046 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1ycc |
RMSD bond length | 0.007 |
RMSD bond angle | 1.674 |
Data reduction software | DENZO |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 15.000 | 2.500 |
High resolution limit [Å] | 2.400 | 2.400 |
Rmerge | 0.177 | 0.347 |
Rmeas | 0.223 | 0.446 |
Rpim | 0.133 | 0.273 |
Number of reflections | 4586 | 436 |
<I/σ(I)> | 3.2 | 1.7 |
Completeness [%] | 95.8 | 90.4 |
Redundancy | 2.2 | 2.1 |
CC(1/2) | 0.951 | 0.747 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.25 | 277 | 25% PEG 4000, 0.1 M Tris-HCl, pH 8.25 |