6C3T
AMYLOID FORMING PEPTIDE AADTWE FROM TRANSTHYRETIN WITH ATTR-D38A MUTATION ASSOCIATED WITH A FAMILIAL FORM OF TRANSTHYRETIN AMYLOIDOSIS
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2008-10-29 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.9792 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 9.019, 43.157, 9.392 |
Unit cell angles | 90.00, 102.84, 90.00 |
Refinement procedure
Resolution | 21.580 - 1.000 |
R-factor | 0.1107 |
Rwork | 0.109 |
R-free | 0.12400 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | Ideal beta strand |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | REFMAC (5.4.0061) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 90.000 | 90.000 | 1.080 |
High resolution limit [Å] | 1.000 | 1.710 | 1.000 |
Rmerge | 0.128 | 0.089 | 0.397 |
Number of reflections | 3204 | 766 | 353 |
<I/σ(I)> | 11.7 | ||
Completeness [%] | 83.5 | 96.7 | 46.8 |
Redundancy | 13.9 | 14.1 | 10.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 298 | AADTWE crystals were grown from a solution containing 100 mg/ml peptide. The reservoir contained 0.2 M Ammonium phosphate monobasic, 0.1 M Tris pH 8.5, and 50 % v/v MPD. Crystals were soaked on 25% Glycerol prior to diffraction |