6BRX
Crystal Structure of Human DNA polymerase kappa in complex with DNA containing the major cisplatin lesion
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | CLSI BEAMLINE 08ID-1 |
Synchrotron site | CLSI |
Beamline | 08ID-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-12-13 |
Detector | RAYONIX MX-300 |
Wavelength(s) | 0.97949 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 66.690, 129.060, 168.088 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.470 - 2.800 |
R-factor | 0.21563 |
Rwork | 0.214 |
R-free | 0.26895 |
RMSD bond length | 0.008 |
RMSD bond angle | 1.220 |
Data reduction software | iMOSFLM |
Data scaling software | SCALA |
Phasing software | REFMAC |
Refinement software | REFMAC (5.8.0135) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.470 | 2.950 |
High resolution limit [Å] | 2.800 | 2.800 |
Rmerge | 0.093 | 0.524 |
Rpim | 0.828 | |
Number of reflections | 36493 | |
<I/σ(I)> | 9.7 | |
Completeness [%] | 99.6 | |
Redundancy | 4.4 | |
CC(1/2) | 0.996 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 295.15 | 15-20% PEG400 and 0.1-0.2 M ammonium iodide (NH4I) |