6BMM
Structure of human DHHC20 palmitoyltransferase, space group P21
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-D |
Synchrotron site | APS |
Beamline | 23-ID-D |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-10-12 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 1.279510 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 86.519, 57.700, 94.098 |
Unit cell angles | 90.00, 115.51, 90.00 |
Refinement procedure
Resolution | 28.850 - 2.350 |
R-factor | 0.2424 |
Rwork | 0.241 |
R-free | 0.26030 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.002 |
RMSD bond angle | 0.425 |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.27) |
Phasing software | PHASER (2.7.15) |
Refinement software | PHENIX (1.12_2829) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 28.850 | 28.850 | 2.440 |
High resolution limit [Å] | 2.350 | 8.790 | 2.350 |
Rmerge | 0.120 | 0.053 | 2.201 |
Rmeas | 0.129 | 0.058 | 2.349 |
Rpim | 0.045 | 0.021 | 0.806 |
Total number of observations | 287546 | ||
Number of reflections | 35217 | 702 | 3633 |
<I/σ(I)> | 10 | ||
Completeness [%] | 99.9 | 97 | 99.5 |
Redundancy | 8.2 | 7.3 | 8.2 |
CC(1/2) | 0.998 | 0.999 | 0.387 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | LIPIDIC CUBIC PHASE | 293 | 50mM MES, pH 6.5, 50mM NaH2PO4, 30.3% PEG 300, 50mM DTT, 2.5% 2,5-hexanediol |