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6BHV

Human PARP-1 bound to NAD+ analog benzamide adenine dinucleotide (BAD)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 12.3.1
Synchrotron siteALS
Beamline12.3.1
Temperature [K]100
Detector technologyCCD
Collection date2016-07-13
DetectorADSC QUANTUM 210r
Wavelength(s)1.008
Spacegroup nameP 1
Unit cell lengths44.510, 75.356, 85.607
Unit cell angles98.66, 104.94, 106.73
Refinement procedure
Resolution20.000 - 2.300
R-factor0.19901
Rwork0.198
R-free0.22233
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5ds3
RMSD bond length0.010
RMSD bond angle1.489
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0158)
Data quality characteristics
 Overall
Low resolution limit [Å]50.000
High resolution limit [Å]2.300
Number of reflections43372
<I/σ(I)>13.2
Completeness [%]97.8
Redundancy4.8
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP293PARP-1 CATdeltaHD (30 mg/ml) was crystallized in the presence of 1.6 mM BAD in 24 to 29% PEG 3350, 0.2 M NaCl, 0.1 M Bis-Tris pH 5.5

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PDB entries from 2024-05-15

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