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6B7C

Crystal structure of E.coli Phosphopantetheine Adenylyltransferase (PPAT/CoaD) in complex with N-((1,3-dimethyl-1H-pyrazol-5-yl)methyl)-5-methyl-1H-imidazo[4,5-b]pyridin-2-amine

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU FR-E+ SUPERBRIGHT
Temperature [K]100
Detector technologyIMAGE PLATE
Collection date2017-03-01
DetectorRIGAKU RAXIS HTC
Wavelength(s)1.5418
Spacegroup nameI 2 3
Unit cell lengths135.050, 135.050, 135.050
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution26.485 - 1.564
R-factor0.1746
Rwork0.173
R-free0.19850
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5jbn
RMSD bond length0.007
RMSD bond angle0.962
Data reduction softwareiMOSFLM (7.2.1)
Data scaling softwareAimless (0.5.29)
Phasing softwarePHENIX (1.12_2829)
Refinement softwarePHENIX (1.12_2829)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]42.71042.7101.590
High resolution limit [Å]1.5608.5701.560
Rmerge0.0540.0200.594
Rmeas0.0560.0210.621
Rpim0.0160.0060.183
Total number of observations711585
Number of reflections576693852848
<I/σ(I)>21.7
Completeness [%]100.098.3100
Redundancy12.31111.4
CC(1/2)1.0001.0000.913
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP2911.8 M AMMONIUM SULFATE, 0.25 M POTASSIUM THIOCYANATE, 0.2 M POTASSIUM BROMIDE

220113

PDB entries from 2024-05-22

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