6B3B
AprA Methyltransferase 1 - GNAT in complex with Mn2+ , SAM, and Malonate
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-D |
Synchrotron site | APS |
Beamline | 23-ID-D |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-07-13 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.033 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 60.705, 88.337, 136.755 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.985 - 1.850 |
R-factor | 0.184 |
Rwork | 0.183 |
R-free | 0.21830 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6b3a |
RMSD bond length | 0.007 |
RMSD bond angle | 0.833 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHENIX |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 46.985 | 46.985 | 1.960 |
High resolution limit [Å] | 1.850 | 5.500 | 1.850 |
Rmerge | 0.099 | 0.047 | 0.755 |
Rmeas | 0.115 | 0.055 | 0.893 |
Total number of observations | 211336 | ||
Number of reflections | 61427 | 2328 | 9777 |
<I/σ(I)> | 7.72 | 22.93 | 1.23 |
Completeness [%] | 95.9 | 88.9 | 95.8 |
Redundancy | 3.44 | 3.398 | 3.264 |
CC(1/2) | 0.995 | 0.996 | 0.568 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 277 | 0.05 M sodium malonate, 16% PEG3350 |