6B1U
Structure of full-length human AMPK (a2b1g1) in complex with a small molecule activator SC4
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX2 |
Synchrotron site | Australian Synchrotron |
Beamline | MX2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-12-04 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.9537 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 75.827, 133.897, 141.725 |
Unit cell angles | 90.00, 92.74, 90.00 |
Refinement procedure
Resolution | 48.640 - 2.770 |
R-factor | 0.196 |
Rwork | 0.194 |
R-free | 0.22600 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4zhx |
RMSD bond length | 0.008 |
RMSD bond angle | 1.010 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | BUSTER (2.10.2) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.640 | 2.830 |
High resolution limit [Å] | 2.770 | 2.770 |
Rmerge | 0.074 | 0.632 |
Rpim | 0.048 | 0.412 |
Number of reflections | 71788 | 4646 |
<I/σ(I)> | 10.5 | 2.1 |
Completeness [%] | 99.8 | 100 |
Redundancy | 3.3 | 3.3 |
CC(1/2) | 0.996 | 0.652 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.2 | 277 | 8% PEG 3350, 0.1 M MgCl2, 1.0% glucose, 0.001% cocamidopropyl betaine and 0.1 M imidazole. |