6B1J
Crystal structure KPC-2 beta-lactamase complexed with WCK 5107 by soaking
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL7-1 |
Synchrotron site | SSRL |
Beamline | BL7-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-05-17 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 1.12708 |
Spacegroup name | P 1 |
Unit cell lengths | 34.440, 37.416, 82.128 |
Unit cell angles | 92.31, 90.04, 95.26 |
Refinement procedure
Resolution | 34.290 - 1.600 |
R-factor | 0.1522 |
Rwork | 0.150 |
R-free | 0.18700 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.014 |
RMSD bond angle | 1.792 |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.8) |
Refinement software | REFMAC (5.8.0135) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 37.230 | 1.630 |
High resolution limit [Å] | 1.600 | 1.600 |
Rmerge | 0.046 | 0.420 |
Rmeas | 0.065 | 0.594 |
Rpim | 0.046 | 0.420 |
Total number of observations | 101180 | |
Number of reflections | 51151 | 2437 |
<I/σ(I)> | 11.9 | |
Completeness [%] | 94.9 | 89.1 |
Redundancy | 2 | 1.9 |
CC(1/2) | 0.997 | 0.617 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4 | 295 | 20% PEG 6000, 100 mM citrate pH 4.0, 100 mM KSCN, and 10 mM CdCl2. Crystal was soaked for 3hr in 10mM WCK 5107 at pH 5.0 |