6AXV
Structure of the T58S/T107I/P122A mutant of the HIV-1 capsid protein in complex with PF-3450074 (PF74)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 4.2.2 |
Synchrotron site | ALS |
Beamline | 4.2.2 |
Temperature [K] | 100 |
Detector technology | CMOS |
Collection date | 2016-12-01 |
Detector | RDI CMOS_8M |
Wavelength(s) | 1.000031 |
Spacegroup name | P 6 |
Unit cell lengths | 92.998, 92.998, 57.631 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 46.499 - 2.770 |
R-factor | 0.2312 |
Rwork | 0.228 |
R-free | 0.27850 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4xfx |
RMSD bond length | 0.003 |
RMSD bond angle | 0.573 |
Data reduction software | Aimless (0.5.32) |
Data scaling software | Aimless (0.5.32) |
Phasing software | PHASER (2.7.17) |
Refinement software | PHENIX (1.11.1-2575_1692) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 46.500 | 46.500 | 2.920 |
High resolution limit [Å] | 2.770 | 8.750 | 2.770 |
Rmerge | 0.104 | 0.035 | 0.932 |
Rmeas | 0.110 | 0.037 | 0.995 |
Rpim | 0.034 | 0.012 | 0.341 |
Total number of observations | 72267 | ||
Number of reflections | 7089 | 253 | 921 |
<I/σ(I)> | 19.1 | ||
Completeness [%] | 95.9 | 98.7 | 86.5 |
Redundancy | 10.2 | 10.3 | 7.8 |
CC(1/2) | 0.998 | 0.998 | 0.714 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291 | PEG3350, NaI, Sodium cacosylate, Glycerol |