6A34
Crystal structure of 5-methylthioribose 1-phosphate isomerase from Pyrococcus horikoshii OT3 - Form I
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2017-11-21 |
Detector | RIGAKU RAXIS IV++ |
Wavelength(s) | 1.5418 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 169.750, 169.750, 53.690 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 55.630 - 2.300 |
R-factor | 0.1803 |
Rwork | 0.177 |
R-free | 0.23720 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1t5o |
RMSD bond length | 0.010 |
RMSD bond angle | 1.453 |
Data reduction software | MOSFLM (7.2.1) |
Data scaling software | Aimless (0.5.28) |
Phasing software | PHASER (2.6.1) |
Refinement software | REFMAC (5.8.0155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 84.870 | 84.870 | 2.380 |
High resolution limit [Å] | 2.300 | 8.910 | 2.300 |
Rmerge | 0.065 | 0.027 | 0.538 |
Rmeas | 0.069 | 0.029 | 0.583 |
Rpim | 0.024 | 0.009 | 0.219 |
Total number of observations | 316498 | ||
Number of reflections | 39641 | 738 | 3881 |
<I/σ(I)> | 18.9 | ||
Completeness [%] | 100.0 | 99.7 | 100 |
Redundancy | 8 | 9 | 6.7 |
CC(1/2) | 0.999 | 1.000 | 0.900 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | MICROBATCH | 5.6 | 277 | 0.1M sodium citrate tribasic dihydrate pH 5.6, 2.5M 1,6-hexanediol |