5ZT9
SirB from Bacillus subtilis with Ni2+
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-5A |
Synchrotron site | Photon Factory |
Beamline | BL-5A |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-02-23 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 1 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 69.730, 53.700, 78.020 |
Unit cell angles | 90.00, 107.66, 90.00 |
Refinement procedure
Resolution | 43.426 - 2.800 |
R-factor | 0.2137 |
Rwork | 0.212 |
R-free | 0.24530 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5zt7 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MOLREP |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 43.426 | 43.426 | 2.900 |
High resolution limit [Å] | 2.800 | 10.000 | 2.800 |
Rmerge | 0.178 | 0.055 | 0.997 |
Rmeas | 0.210 | 0.064 | 1.185 |
Total number of observations | 92210 | ||
Number of reflections | 13781 | 567 | 2649 |
<I/σ(I)> | 6.24 | 18.83 | 1.27 |
Completeness [%] | 99.4 | 97.8 | 99.6 |
Redundancy | 3.487 | 3.691 | 3.423 |
CC(1/2) | 0.984 | 0.996 | 0.512 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 9 | 293 | 0.1 M Bicine, 20 %(w/v) PEG 6000, 10mM Nickel sulfate |