5ZSP
NifS from Hydrogenimonas thermophila
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE AR-NE3A |
Synchrotron site | Photon Factory |
Beamline | AR-NE3A |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-11-23 |
Detector | DECTRIS PILATUS 2M-F |
Wavelength(s) | 1 |
Spacegroup name | P 65 |
Unit cell lengths | 134.940, 134.940, 98.760 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 45.486 - 2.570 |
R-factor | 0.2155 |
Rwork | 0.214 |
R-free | 0.23780 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1eg5 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MOLREP |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 45.486 | 45.486 | 2.670 |
High resolution limit [Å] | 2.570 | 10.000 | 2.570 |
Rmerge | 0.089 | 0.026 | 0.951 |
Rmeas | 0.092 | 0.026 | 0.977 |
Total number of observations | 659039 | ||
Number of reflections | 32592 | 579 | 3495 |
<I/σ(I)> | 26.59 | 87.74 | 4.19 |
Completeness [%] | 99.8 | 99 | 99.8 |
Redundancy | 20.221 | 20.254 | 19.307 |
CC(1/2) | 0.999 | 0.999 | 0.945 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 293 | 0.2M Magnesium chloride, 0.1M Tris-HCl, 20% (w/v) PEG 8000 |