5ZQJ
Crystal structure of beta-xylosidase from Bacillus pumilus
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PAL/PLS BEAMLINE 5C (4A) |
Synchrotron site | PAL/PLS |
Beamline | 5C (4A) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-11-04 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.99990 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 115.261, 105.201, 105.814 |
Unit cell angles | 90.00, 122.71, 90.00 |
Refinement procedure
Resolution | 47.245 - 1.730 |
R-factor | 0.1562 |
Rwork | 0.154 |
R-free | 0.18820 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1yif |
RMSD bond length | 0.007 |
RMSD bond angle | 0.875 |
Data reduction software | DENZO |
Data scaling software | HKL-2000 |
Phasing software | MOLREP |
Refinement software | PHENIX ((1.11.1_2575: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 1.760 |
High resolution limit [Å] | 1.730 | 1.730 |
Rmerge | 0.080 | 0.294 |
Rmeas | 0.088 | 0.347 |
Rpim | 0.036 | 0.180 |
Number of reflections | 107503 | 5058 |
<I/σ(I)> | 17.23 | 2.63 |
Completeness [%] | 97.5 | 92.1 |
Redundancy | 4.7 | 3 |
CC(1/2) | 0.785 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 287 | 0.05M HEPES (pH 7.5), 20%(w/v) PEG 3350, 1%(w/v) tryptone |