Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5ZN6

Crystal structure of GH31 alpha-xylosidase from a soil metagenome

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSPRING-8 BEAMLINE BL44XU
Synchrotron siteSPring-8
BeamlineBL44XU
Temperature [K]100
Detector technologyCCD
Collection date2015-12-08
DetectorRAYONIX MX300HE
Wavelength(s)0.9
Spacegroup nameP 1 21 1
Unit cell lengths173.146, 124.174, 177.453
Unit cell angles90.00, 116.81, 90.00
Refinement procedure
Resolution50.000 - 1.800
R-factor0.17525
Rwork0.174
R-free0.19497
Structure solution methodSAD
RMSD bond length0.008
RMSD bond angle1.295
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwareAutoSol
Refinement softwareREFMAC (5.8.0158)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0001.830
High resolution limit [Å]1.8001.800
Rmerge0.0670.252
Number of reflections56152723616
<I/σ(I)>15.92.8
Completeness [%]91.277.2
Redundancy2.91.9
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.42931.6 M lithium sulfate, 100 mM Tris-HCl

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon