5ZKN
Structure of N-acetylmannosamine-6-phosphate 2-epimerase from Fusobacterium nucleatum
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SOLEIL BEAMLINE PROXIMA 1 |
Synchrotron site | SOLEIL |
Beamline | PROXIMA 1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-09-29 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9786 |
Spacegroup name | I 2 2 2 |
Unit cell lengths | 47.515, 75.347, 135.882 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 38.820 - 2.205 |
R-factor | 0.1856 |
Rwork | 0.183 |
R-free | 0.23260 |
RMSD bond length | 0.009 |
RMSD bond angle | 0.905 |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.29) |
Phasing software | PHASER |
Refinement software | PHENIX (1.10.1_2155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 44.850 | 44.850 | 2.270 |
High resolution limit [Å] | 2.210 | 9.090 | 2.210 |
Rmerge | 0.070 | 0.044 | 0.700 |
Rmeas | 0.076 | 0.048 | 0.761 |
Rpim | 0.030 | 0.020 | 0.297 |
Total number of observations | 80912 | 1075 | 6997 |
Number of reflections | 12687 | 213 | 1086 |
<I/σ(I)> | 13.5 | 32.4 | 2.8 |
Completeness [%] | 99.9 | 98.4 | 99 |
Redundancy | 6.4 | 5 | 6.4 |
CC(1/2) | 0.998 | 0.997 | 0.783 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.2 | 293 | 20% PEG 3350, 0,1M MES pH5.2, 0.4M MgCl2 |