Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

5ZK0

Crystal structure of Peptidyl-tRNA hydrolase mutant -M71A from Vibrio cholerae

Replaces:  5H6F
Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU FR-E+ SUPERBRIGHT
Temperature [K]100
Detector technologyIMAGE PLATE
Collection date2016-06-10
DetectorRIGAKU RAXIS IV++
Wavelength(s)1.54
Spacegroup nameC 2 2 21
Unit cell lengths36.709, 117.491, 201.618
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution100.810 - 2.550
R-factor0.19028
Rwork0.186
R-free0.26316
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4zxp
RMSD bond length0.011
RMSD bond angle1.448
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwareMOLREP
Refinement softwareREFMAC (5.8.0049)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]100.8102.640
High resolution limit [Å]2.5502.550
Rmerge0.0610.206
Number of reflections14447
<I/σ(I)>26.96
Completeness [%]97.3
Redundancy4.7
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP2950.1M sodium citrate, 0.2M ammonium acetate, 20% polyethylene glycol 4000

243911

PDB entries from 2025-10-29

PDB statisticsPDBj update infoContact PDBjnumon