5ZJ1
Crystal structure of NDM-1 in complex with D-captopril derivative CYT-14
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U1 |
Synchrotron site | SSRF |
Beamline | BL17U1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-09-22 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.98000 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 41.449, 59.944, 41.964 |
Unit cell angles | 90.00, 98.42, 90.00 |
Refinement procedure
Resolution | 27.936 - 0.960 |
R-factor | 0.132 |
Rwork | 0.131 |
R-free | 0.14990 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3Q6X |
RMSD bond length | 0.005 |
RMSD bond angle | 1.118 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | PHENIX (dev_1992) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 0.990 |
High resolution limit [Å] | 0.960 | 2.070 | 0.960 |
Rmerge | 0.068 | 0.061 | 0.351 |
Number of reflections | 117982 | 12507 | 7812 |
<I/σ(I)> | 21.8 | ||
Completeness [%] | 95.3 | 99.5 | 63.5 |
Redundancy | 5.7 | 7.6 | 3.3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.5 | 295 | 0.1M Bis-Tris pH5.5, 15% PEG 3350, 20mM L-proline |