5ZHO
Human group C rotavirus VP8*s recognize type A histo-blood group antigens as ligands
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 103 |
Detector technology | PIXEL |
Collection date | 2017-11-07 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.97853 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 37.985, 39.821, 119.814 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 37.789 - 1.401 |
R-factor | 0.1428 |
Rwork | 0.141 |
R-free | 0.17380 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5zhg |
RMSD bond length | 0.008 |
RMSD bond angle | 0.828 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.12_2829) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 1.450 |
High resolution limit [Å] | 1.400 | 1.400 |
Rmerge | 0.099 | 0.565 |
Number of reflections | 36324 | |
<I/σ(I)> | 28.586 | |
Completeness [%] | 99.0 | |
Redundancy | 12.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | EVAPORATION | 6.5 | 291 | 0.1 M Sodium chloride, 0.1 M BIS-TRIS pH 6.5, 1.5 M Ammonium sulfate |