5ZDA
Crystal structure of poly(ADP-ribose) glycohydrolase (PARG) from Deinococcus radiodurans in apo form
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSRRC BEAMLINE BL13C1 |
Synchrotron site | NSRRC |
Beamline | BL13C1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2012-11-10 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.97622 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 45.096, 71.073, 72.257 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 26.209 - 1.548 |
R-factor | 0.1708 |
Rwork | 0.170 |
R-free | 0.18990 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3sih |
RMSD bond length | 0.006 |
RMSD bond angle | 0.813 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX ((1.12_2829)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 26.210 | 1.610 |
High resolution limit [Å] | 1.548 | 1.550 |
Rmerge | 0.057 | 0.487 |
Number of reflections | 33721 | |
<I/σ(I)> | 19.53 | 4.391 |
Completeness [%] | 97.7 | 100 |
Redundancy | 7.8 | 8.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 283 | 0.2M Li2SO4, 0.1 M Bis-Tris pH 6.5, 25% PEG 3350 |