5ZCQ
Azide-bound cytochrome c oxidase structure determined using the crystals exposed to 10 mM azide solution for 2 days
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL44XU |
Synchrotron site | SPring-8 |
Beamline | BL44XU |
Temperature [K] | 50 |
Detector technology | CCD |
Collection date | 2014-07-03 |
Detector | RAYONIX MX225HE |
Wavelength(s) | 0.9 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 182.330, 204.832, 177.691 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 40.000 - 1.650 |
R-factor | 0.1629 |
Rwork | 0.162 |
R-free | 0.18200 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5b1a |
RMSD bond length | 0.032 |
RMSD bond angle | 2.911 |
Data scaling software | SCALEPACK |
Phasing software | REFMAC (5.8.0048) |
Refinement software | REFMAC (5.8.0048) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 200.000 | 200.000 | 1.660 |
High resolution limit [Å] | 1.650 | 5.640 | 1.650 |
Rmerge | 0.090 | 0.057 | 0.883 |
Rmeas | 0.094 | 0.061 | 0.937 |
Rpim | 0.029 | 0.020 | 0.310 |
Number of reflections | 791265 | 20217 | 19668 |
<I/σ(I)> | 13 | ||
Completeness [%] | 99.9 | 97.4 | 100 |
Redundancy | 10 | 10.2 | 9 |
CC(1/2) | 0.997 | 0.895 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | BATCH MODE | 6.8 | 277 | PEG 4000, Sodium phosphate |