5Z0C
Nerol dehydrogenase from Persicaria minor
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I02 |
Synchrotron site | Diamond |
Beamline | I02 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2012-12-21 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.9795 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 83.000, 54.030, 79.370 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 79.370 - 1.540 |
R-factor | 0.1504 |
Rwork | 0.148 |
R-free | 0.18810 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1yqd |
RMSD bond length | 0.021 |
RMSD bond angle | 2.082 |
Data reduction software | xia2 |
Data scaling software | XSCALE |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0073) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 79.370 | 79.370 | 1.580 |
High resolution limit [Å] | 1.540 | 6.890 | 1.540 |
Rmerge | 0.043 | 0.017 | 0.595 |
Rmeas | 0.054 | 0.021 | 0.760 |
Number of reflections | 52988 | 1109 | 7336 |
<I/σ(I)> | 13.03 | 47.88 | 1.7 |
Completeness [%] | 96.6 | 95.9 | 96.8 |
Redundancy | 2.357 | 2.472 | 2.369 |
CC(1/2) | 0.999 | 0.999 | 0.611 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 294 | HEPES sodium, propanol, PEG 4000 |