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5YZ4

Structure of the PIN domain endonuclease Utp24

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRF BEAMLINE BL17U1
Synchrotron siteSSRF
BeamlineBL17U1
Temperature [K]100
Detector technologyCCD
Collection date2016-11-16
DetectorADSC QUANTUM 315
Wavelength(s)0.979135
Spacegroup nameC 2 2 21
Unit cell lengths48.740, 73.328, 74.262
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution40.591 - 2.135
R-factor0.2282
Rwork0.222
R-free0.28700
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4mj7
RMSD bond length0.008
RMSD bond angle0.903
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwareMOLREP
Refinement softwarePHENIX ((1.10.1_2155: ???))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0002.170
High resolution limit [Å]2.1302.130
Rmerge0.1841.000
Number of reflections7270284
<I/σ(I)>18.91.9
Completeness [%]94.573.6
Redundancy12.17.3
CC(1/2)0.795
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP82930.2M calcium acetate and 20% polyethylene glycol 3350

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PDB entries from 2024-04-17

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