5YVJ
Crystal structure of full length NS2B47-NS3 (gD4NS2BNS3) from Dengue virus 4 in open conformation
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06DA |
Synchrotron site | SLS |
Beamline | X06DA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-11-21 |
Detector | DECTRIS PILATUS 2M-F |
Wavelength(s) | 1 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 52.780, 86.810, 75.900 |
Unit cell angles | 90.00, 93.07, 90.00 |
Refinement procedure
Resolution | 45.051 - 2.508 |
R-factor | 0.1907 |
Rwork | 0.188 |
R-free | 0.24560 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2vbc |
RMSD bond length | 0.005 |
RMSD bond angle | 0.846 |
Data reduction software | iMOSFLM |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 45.051 | 2.640 |
High resolution limit [Å] | 2.508 | 2.508 |
Rmerge | 0.093 | 0.394 |
Rmeas | 0.117 | 0.497 |
Rpim | 0.299 | |
Number of reflections | 22654 | 2117 |
<I/σ(I)> | 5.52 | 2.2 |
Completeness [%] | 96.3 | 90.87 |
Redundancy | 2.4 | 2.4 |
CC(1/2) | 0.980 | 0.817 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6 | 291.15 | 0.1M MES pH7.5, 15% PEG 6000 |