5YTX
Crystal structure of YB1 cold-shock domain in complex with UCAACU
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-12-21 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.97915 |
Spacegroup name | P 62 |
Unit cell lengths | 66.512, 66.512, 33.633 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 28.801 - 1.551 |
R-factor | 0.2041 |
Rwork | 0.200 |
R-free | 0.24040 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3pf5 |
RMSD bond length | 0.006 |
RMSD bond angle | 0.919 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.000 | 1.610 |
High resolution limit [Å] | 1.550 | 1.550 |
Number of reflections | 12349 | |
<I/σ(I)> | 35.4 | |
Completeness [%] | 98.9 | |
Redundancy | 6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 290 | 30 % (v/v) 2-methyl-2,4-pentanediol, 0.1 M sodium acetate, pH 4.5, 25 % (w/v) PEG 1500 |