5YT1
Crystal structrure of near infrared fluoresecent protein mNeptune684
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL18U1 |
Synchrotron site | SSRF |
Beamline | BL18U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-01-17 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.9777 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 63.643, 116.878, 63.721 |
Unit cell angles | 90.00, 106.65, 90.00 |
Refinement procedure
Resolution | 46.802 - 2.000 |
R-factor | 0.1976 |
Rwork | 0.197 |
R-free | 0.22140 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3ip2 |
RMSD bond length | 0.005 |
RMSD bond angle | 1.014 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX ((1.11.1_2575: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.810 | 2.050 |
High resolution limit [Å] | 2.000 | 2.000 |
Rmerge | 0.135 | 0.557 |
Rmeas | 0.136 | 0.607 |
Number of reflections | 60120 | 4482 |
<I/σ(I)> | 10.41 | |
Completeness [%] | 99.8 | 99.7 |
Redundancy | 6.7 | 6.4 |
CC(1/2) | 0.995 | 0.691 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.9 | 289 | 20 mM Tris, NaCl 100 mM, pH 7.9, 0.2 M Lithium Chloride, 20% w/v Polyethylene Glycol 3350 |