5YS6
Structure of the ectodomain of pseudorabies virus glycoproten B
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U1 |
Synchrotron site | SSRF |
Beamline | BL17U1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-11-05 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.97915 |
Spacegroup name | H 3 |
Unit cell lengths | 100.288, 100.288, 272.918 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 35.569 - 3.100 |
R-factor | 0.229 |
Rwork | 0.227 |
R-free | 0.26670 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2gum |
RMSD bond length | 0.006 |
RMSD bond angle | 0.982 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | SHELXD |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 3.210 |
High resolution limit [Å] | 3.100 | 3.100 |
Number of reflections | 18750 | |
<I/σ(I)> | 15.779 | |
Completeness [%] | 99.9 | |
Redundancy | 5.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 291.15 | 34% PEG 200, 0.1 M citric acid |