5YL9
1.86 Angstrom crystal structure of human Coronavirus 229E fusion core
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U1 |
Synchrotron site | SSRF |
Beamline | BL17U1 |
Temperature [K] | 80 |
Detector technology | CCD |
Collection date | 2017-03-11 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 0.97945 |
Spacegroup name | H 3 2 |
Unit cell lengths | 46.941, 46.941, 402.145 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 44.683 - 1.861 |
R-factor | 0.1836 |
Rwork | 0.182 |
R-free | 0.20650 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2ieq |
RMSD bond length | 0.006 |
RMSD bond angle | 0.632 |
Data reduction software | HKL-3000 |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.13_2998: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 44.700 | 1.930 |
High resolution limit [Å] | 1.860 | 1.860 |
Rmerge | 0.073 | 0.654 |
Rmeas | 0.075 | 0.670 |
Rpim | 0.016 | 0.143 |
Number of reflections | 15101 | 1079 |
<I/σ(I)> | 31.5 | 5.3 |
Completeness [%] | 99.9 | 100 |
Redundancy | 20 | |
CC(1/2) | 1.000 | 0.964 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | EVAPORATION | 293 | citric acid, BIS-TRIS propane, PEG3350 |