5YKS
Crystal structure of sucrose nonfermenting-related kinase (SNRK)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U1 |
Synchrotron site | SSRF |
Beamline | BL17U1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-04-17 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.9792 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 91.920, 99.075, 118.656 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.297 - 2.900 |
R-factor | 0.2241 |
Rwork | 0.222 |
R-free | 0.26680 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3fe3 |
RMSD bond length | 0.008 |
RMSD bond angle | 0.977 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX ((1.10.1_2155)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.000 | 2.950 |
High resolution limit [Å] | 2.900 | 2.900 |
Rmerge | 0.080 | 0.497 |
Rmeas | 0.087 | 0.534 |
Rpim | 0.033 | 0.194 |
Number of reflections | 23940 | |
<I/σ(I)> | 40.2 | 5.15 |
Completeness [%] | 96.2 | 99.9 |
Redundancy | 6.8 | 7.4 |
CC(1/2) | 0.935 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.2 | 277 | 0.1 M HEPES, 0.07 M Magnesium formate, 4.5% D-Sorbitol |