Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5YKJ

Structural basis of the thiol resolving mechanism in yeast mitochondrial 1-Cys peroxiredoxin via glutathione/thioredoxin systems

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRF BEAMLINE BL17U1
Synchrotron siteSSRF
BeamlineBL17U1
Temperature [K]100
Detector technologyCCD
Collection date2016-04-10
DetectorADSC QUANTUM 315r
Wavelength(s)0.97022
Spacegroup nameP 41 21 2
Unit cell lengths84.030, 84.030, 62.784
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution43.156 - 1.530
R-factor0.1793
Rwork0.178
R-free0.19270
RMSD bond length0.031
RMSD bond angle1.982
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHASER
Refinement softwarePHENIX ((1.11.1_2575))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]43.2001.580
High resolution limit [Å]1.5301.530
Number of reflections344563385
<I/σ(I)>14.243.87
Completeness [%]100.099.91
Redundancy22.518.3
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP29223% (W/V) PEG-2000 MME ,100mM Tris base/Hydrochloric acid pH 4.7.

226707

PDB entries from 2024-10-30

PDB statisticsPDBj update infoContact PDBjnumon