5YKJ
Structural basis of the thiol resolving mechanism in yeast mitochondrial 1-Cys peroxiredoxin via glutathione/thioredoxin systems
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U1 |
Synchrotron site | SSRF |
Beamline | BL17U1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-04-10 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.97022 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 84.030, 84.030, 62.784 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 43.156 - 1.530 |
R-factor | 0.1793 |
Rwork | 0.178 |
R-free | 0.19270 |
RMSD bond length | 0.031 |
RMSD bond angle | 1.982 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX ((1.11.1_2575)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 43.200 | 1.580 |
High resolution limit [Å] | 1.530 | 1.530 |
Number of reflections | 34456 | 3385 |
<I/σ(I)> | 14.24 | 3.87 |
Completeness [%] | 100.0 | 99.91 |
Redundancy | 22.5 | 18.3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 292 | 23% (W/V) PEG-2000 MME ,100mM Tris base/Hydrochloric acid pH 4.7. |