5YI8
Crystal structure of drosophila Numb PTB domain and Pon peptide complex
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL18U1 |
Synchrotron site | SSRF |
Beamline | BL18U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-03-23 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.9754 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 43.392, 43.392, 181.304 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 36.796 - 2.001 |
R-factor | 0.1929 |
Rwork | 0.191 |
R-free | 0.22740 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3f0w |
RMSD bond length | 0.010 |
RMSD bond angle | 0.951 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX ((1.11.1_2575: ???)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.030 |
High resolution limit [Å] | 2.000 | 5.430 | 2.000 |
Rmerge | 0.052 | 0.030 | 0.762 |
Rmeas | 0.058 | 0.034 | 0.870 |
Rpim | 0.025 | 0.014 | 0.407 |
Total number of observations | 67717 | ||
Number of reflections | 14087 | 791 | 671 |
<I/σ(I)> | 10.3 | ||
Completeness [%] | 98.6 | 95.5 | 96.7 |
Redundancy | 4.8 | 5.1 | 4.3 |
CC(1/2) | 0.998 | 0.735 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | EVAPORATION | 7 | 289 | 0.1M sodium formate, 12% PEG 3350 |