5YHH
Crystal structure of YiiM from Geobacillus stearothermophilus
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PAL/PLS BEAMLINE 7A (6B, 6C1) |
Synchrotron site | PAL/PLS |
Beamline | 7A (6B, 6C1) |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-05-01 |
Detector | ADSC QUANTUM 270 |
Wavelength(s) | 1.00004 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 46.420, 51.526, 94.210 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 30.000 - 2.000 |
R-factor | 0.18714 |
Rwork | 0.185 |
R-free | 0.22346 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1o65 |
RMSD bond length | 0.015 |
RMSD bond angle | 1.440 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-3000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.5.0109) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.000 | 2.070 |
High resolution limit [Å] | 2.000 | 2.000 |
Rmerge | 0.066 | 0.500 |
Number of reflections | 15858 | |
<I/σ(I)> | 38.9 | 4.8 |
Completeness [%] | 99.7 | |
Redundancy | 5.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | 0.095M sodium citrate pH 5.6, 21% PEG 4000, 19% isopropanol, 5% glycerol |