5YGS
Human TNFRSF25 death domain
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-D |
Synchrotron site | APS |
Beamline | 23-ID-D |
Temperature [K] | 110 |
Detector technology | CCD |
Collection date | 2013-07-08 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 1.032920 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 73.690, 153.550, 98.240 |
Unit cell angles | 90.00, 90.17, 90.00 |
Refinement procedure
Resolution | 98.250 - 2.691 |
Rwork | 0.190 |
R-free | 0.21250 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1anf |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX (v1.12-2829) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 98.250 | 2.793 |
High resolution limit [Å] | 2.691 | 2.696 |
Rmerge | 1.120 | |
Number of reflections | 59937 | |
<I/σ(I)> | 18.53 | |
Completeness [%] | 99.6 | 96.56 |
Redundancy | 7.335 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291 | 2.6 M ammonium sulfate, sodium citrate 5.6, 10% glycerol |