5YGJ
Crystal structure of a synthase from Streptomyces sp. CL190
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSRRC BEAMLINE BL13B1 |
Synchrotron site | NSRRC |
Beamline | BL13B1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-06-16 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 1.0 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 92.525, 118.436, 88.872 |
Unit cell angles | 90.00, 116.35, 90.00 |
Refinement procedure
Resolution | 24.912 - 2.648 |
R-factor | 0.2122 |
Rwork | 0.209 |
R-free | 0.26850 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5xk3 |
RMSD bond length | 0.012 |
RMSD bond angle | 1.691 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX ((1.10_2155: ???)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 25.000 | 25.000 | 2.740 |
High resolution limit [Å] | 2.648 | 5.690 | 2.650 |
Rmerge | 0.053 | 0.031 | 0.364 |
Rmeas | 0.063 | 0.037 | 0.429 |
Rpim | 0.033 | 0.020 | 0.227 |
Number of reflections | 24803 | 2509 | 2416 |
<I/σ(I)> | 17.6 | ||
Completeness [%] | 99.1 | 98.4 | 96.3 |
Redundancy | 3.5 | 3.4 | 3.4 |
CC(1/2) | 0.999 | 0.924 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 298 | NaAc, HEPES, PEG 3350 |