5YGH
Crystal Structure of the Capsid Protein from Zika Virus
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U1 |
Synchrotron site | SSRF |
Beamline | BL17U1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-09-27 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.7293 |
Spacegroup name | P 63 |
Unit cell lengths | 69.417, 69.417, 58.070 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 29.792 - 1.884 |
R-factor | 0.2073 |
Rwork | 0.206 |
R-free | 0.22970 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1sfk |
RMSD bond length | 0.006 |
RMSD bond angle | 0.841 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX ((1.11.1_2575: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 1.970 |
High resolution limit [Å] | 1.880 | 1.900 |
Rmerge | 0.098 | 0.743 |
Rpim | 0.031 | 0.193 |
Number of reflections | 13611 | |
<I/σ(I)> | 21.137 | 6.401 |
Completeness [%] | 99.2 | 100 |
Redundancy | 16 | 16.7 |
CC(1/2) | 0.994 | 0.975 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | 0.01M Iron (III) chloride hexahydrate, 0.1M Sodium citrate pH5.6, 10% v/v Jeffamine M-600 |